One of the questions I have is about the mention of t-cell clonal expansion. I remember that we got excited about this idea for a while, but I thought that it was found not to be present in ME/CFS. Do I have that completely wrong? Would we not expect to see the clonal t-cells in blood samples if they are part of ME/CFS? If t-cell clonal expansion isn't present, do the ideas still hang together?
Jo Cambridge raised this in our discussions and I think we should probably expand on it a bit. The current hypothesis
does not predict the sort of clonal dominance that Mark Davis was looking for but the situation is subtle.
When people look for clonal expansions they are generally looking for individual clones having high cell numbers within a sample, which is what you get immediately after meeting a new antigen. Before you get Covid you will have 0.01% of your T cells recognising spike protein peptides, along with 0.01% recognising thousands of other peptides you never met and 0.1% recognising each of the peptides you once met in the past. On meeting Covid the clones recognising spike peptides may expand to 5% of your T cells. A year later they are down to 0.1%. (The numbers are invented.)
In the model the idea is that certain T cell populations will be expanded at some point in life - probably at the time of illness onset but quite possibly earlier in a prodromal phase. All this needs to be is a shift from the 0.01% group to the 0.1% group for T cells that
happen to be a nuisance in the
relevant genetic and antibody population context. Since we all have clones at both 0.01 and 0.1% levels there is nothing to see. The shift might turn out to be more easily identified but it is hard to say. In the diseases where we are pretty sure that T cell populations are causing pathology there has been pretty little evidence for clonal expansion as far as I know. I am thinking of Reiter's and psoriasis again. Reiter's is problematic because there ought to be a rise in clones recognising the trigger microbe anyway in these people. I have seen suggestion that in psoriasis T cells are recognising a melanocyte antigen but I have not read up about that in enough detail to be sure it is reliable and replicated - or indeed that clonal
expansion has been shown.
And of course if MAIT cells are expanded they do not have the same antigen-specific clonality.
Jo and I have spent most of our time on B cells, which is why we recruited Jackie. She seems happy with the MS but I do think maybe this is one of the aspects most worthy of some debate and literature checking here.
The real problem here is that most immunologists have a simplistic view of these diseases as based on T cell recognition of specific peptides in the context of 'molecular mimicry'. As far as I know none of the rheumatic diseases fits that picture at all well, it at all. The problem lies at quite different levels of regulatory failure, and although those may throw up shifts in T cell populations it is much harder to know what.