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  1. Simon M

    The heart of the matter? Lipkin’s Collaborative probes post-exertional malaise (Simon McGrath blog)

    The state of my health has spiralled downwards this year and is now dire, so this will be the last major blog from me for the forseeable future. If my energy levels improve, I might in future be able to write some shorter blogs on simpler subjects, which might be a relief for everyone. There...
  2. Simon M

    The heart of the matter? Lipkin’s Collaborative probes post-exertional malaise (Simon McGrath blog)

    I'm sure cost is a big factor: the metabolomics analysis in particular is very expensive. Although they have 100/100 patients/controls in the full sample, only 50/50 are definitely included in the exercise study, though Ian Lipkin said they hope to expand that to 75/75. All 100/100 will do the...
  3. Simon M

    The heart of the matter? Lipkin’s Collaborative probes post-exertional malaise (Simon McGrath blog)

    Part 2 of the blog about Dr Ian Lipkin's Collaborative, now up at ME/CFS Research Review The heart of ME/CFS? Lipkin’s Collaborative probes the impact of exertion The hallmark symptom of ME/CFS is post-exertional malaise (PEM), a prolonged, grim and disproportionate response to exertion. While...
  4. Simon M

    The microbiome hypothesis: Lipkin's collaborative, part 1 (Simon McGrath blog)

    Good to see that the teaser worked :-). Coming next week
  5. Simon M

    The microbiome hypothesis: Lipkin's collaborative, part 1 (Simon McGrath blog)

    New blog at ME/CFS Research Review The microbiome hypothesis: Dr Ian Lipkin's collaborative, part 1 A gut reaction is the problem in ME/CFS – that’s the main idea being pursued by Dr Ian W. Lipkin of the Center for Infection and Immunity at Columbia University. He believes that the body’s...
  6. Simon M

    Trial of CT38 for ME/CFS by Cortene Inc.: big claims being made...

    I like this: Endpoints: The study will compare pre- and post-treatment differences, in exercise performance and function during recovery, using a combination of objective and subjective endpoints. Objectively, we will measure exercise performance (via blood gases, work, time to ventilatory...
  7. Simon M

    Ron Davis: Grant award: Molecular and single-cell immunology in ME/CFS

    Interesting video, worth a 5 min watch. A few things that struck me: 1. Mark Davis is joing Principal Investigator along with Ron Davis, which probably isn't surprising given that MD is the immunology expert. 2. Bit more about HLA (see my blog on this) They will use new technology to sequence...
  8. Simon M

    Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics, 2018, Lipkin et al

    Whoops: https://www.nature.com/articles/s41598-018-28477-9 Original post corrected. Thanks. And I'll rest better once the blog is finally out of the door. Pacing perfectly in the meantime, of course...
  9. Simon M

    Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics, 2018, Lipkin et al

    Nice try! Sorry, don't even have the energy to read the paper. However, I'm relying on the summary from @Trish , and over at PR Murf posted this: Six thoughts 1. They confirm some of the previous metabolomic findings - ceramides and phospholipids. 2. They find (yet) another subgroup that can...
  10. Simon M

    Ron Davis’s big immune study is looking at HLA genes (HLA, WTF?) Here’s the story. [Simon M blog]

    If there is a link between HLA and ME/CFS it wouldn't directly leads to to treatment. However, if HLA are shown to be a risk factor, that would point strongly to an infectious or autoimmune cause. It is possible the finding would help researchers to track down the specific infections/autoimmune...
  11. Simon M

    Ron Davis’s big immune study is looking at HLA genes (HLA, WTF?) Here’s the story. [Simon M blog]

    The biobank sample is currently too small (it probably needs 1,000 patients or more) and HLA genes are hard to sequence for technical reasons. Ron has invented a new sequencing method that he will apply in his new study. Thanks. I had to sort out the risk link gremlin in the source code...
  12. Simon M

    Ron Davis’s big immune study is looking at HLA genes (HLA, WTF?) Here’s the story. [Simon M blog]

    New blog at ME/CFS Research Review Dr Ron Davis has won a large NIH (US National Institutes of Health) grant for an immunology project with a strong focus on HLA genes. Which may have led some to wonder, ‘What are they?’ HLA (human leukocyte antigen) molecules play a critical role in the...
  13. Simon M

    Ron Davis: Grant award: Molecular and single-cell immunology in ME/CFS

    Good point. There’s a lot of time and resources being ploughed into this hot topic by some excellent researchers. That’s not so unusual in many fields. Wouldn’t it be great if it became commonplace for ME/CFS research?
  14. Simon M

    Chris Ponting's project to replicate Mark Davis’s remarkable findings of immune activation in ME/CFS (S McGrath blog)

    Yes. For clarity, the PhD is funded to £90k (half from AfME, half from the Scottish Chief Scientist's Office). Chris will cover direct costs for kit etc from his lab budget. I don't have figures, but wouldn't be surprised if the final cost is closer to £150k. In addition, the core technology...
  15. Simon M

    Analysis of data from 500k individuals in UK Biobank shows an inherited component to ME/CFS (Ponting blog)

    Answers from Chris Ponting: 1. People recruited: 500,000 of whom over 2,000 people were self-reporting as having been diagnosed with ME/CFS. Yes, those who were housebound are clearly underrepresented. 2. Yes, [as per Jonathan Edwards explanation], it's less likely to be a critical amino acid...
  16. Simon M

    April 2018 Minutes of the CMRC meeting and latest news

    This looks very encouraging to me. The most important thing is that it is a pitch for more funds to the Medical Research Council's Population and Systems Medicine board. I will charitably assume that accounts for the rather glossy history of the CMRC. The document highlights the key symptom of...
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