The paper claims the following:
A. Evidence for frequent HSV-1 and EBV reactivation in both ME/CFS and LC
B. Experimental reasoning for cellular damage as a result of herpesvirus dUTPase proteins
C. ME/CFS patients have altered autoimmune features , possibly due to the depletion of natural IgM within primary hematopoietic organs
D. Fibronectin protein shows altered expression and immune response patterns that correlate with disease severity
A. Evidence for frequent HSV-1 and EBV reactivation in both ME/CFS and LC
278 patients, 6 months after Covid-19; 149 patients with no LC, 107 with mild LC, 22 with severe LC;
31 healthy controls;
77 ME/CFS
The researchers looked for IgG responses to dUTPases.
The results are given in Figure 1B. I think it's fair to say that there is less reactivation in the 31 healthy controls, but similar amounts of reactivation in the ME/CFS, LC, and, interestingly, in the 149 patients who had had a Covid-19 infection but didn't have LC. For each virus, there were a lot of people in each group who had no sign of reactivation.
B. Experimental reasoning for cellular damage as a result of herpesvirus dUTPase proteins
I had a lot of problems with HSV-1 reactivation after developing ME/CFS, perpetually having cold sores until I had a very long course of valacyclovir. I'm therefore predisposed to believe in the idea of herpes viruses reactivating either as a cause or a result of ME/CFS. But given the lack of evidence in A, the lack of a clear differentiation of response between the groups to the dUTPase proteins of the three viruses, I don't think there's a strong foundation here to build a theory based on reactivation.
It is possible that some of the things that Prusty's group has observed are true and useful findings, that is, perhaps it isn't good for mitochondria or the cytoskeleton when a herpesvirus has reactivated. Still, any theory involving dUTPase proteins or the reactivations in general has to cope with the fact that many people with ME/CFS and LC don't show signs of EBV/HSV-1/HSV6 reactivation. It might be a timing thing - perhaps they would during PEM?
C. Autoimmunity
The paper suggests that chronic HSV-1 and EBV infections lead to autoimmunity, with two papers cited in evidence. The authors considered the possibility that such autoimmunity might be causing ME/CFS symptoms and mitochondrial dysfunction.
They did a study of 17 ME/CFS and 13 controls - applying their IgG to mitochondria in various types of cells. The data from this study is presented poorly and it and the text is unconvincing in terms of there being significant differences. Maybe there is something there somewhere, but this paper does not provide evidence of a difference.
They did some mass spectroscopy on the IgG with bound immune complexes from 12 controls and 15 ME/CFS patients. The authors report finding three proteins reduced in the ME/CFS IgG: fibronectin; alpha 2 macro globulin and serotransferrin. Figure 2d, Extended fig 3d. Extended 3d is more useful to look at. Fibronectin is the only one that looks fairly convincing. The likelihood that lots of molecules were tested in the mass spectroscopy needs to be considered.
They did another small study (12 ME/CFS; 3 controls) looking at IgM levels against 120 auto antigens. There does seem to be some separation of severe ME/CFS from the rest and some of the mild/moderate ME/CFS from the rest, but the number of controls is just way to small to know for sure. Fibronectin is one of the proteins that is reported to differentiate the groups, along with collagen, cyctochrome C, EBNA1, CRP. I have a number of questions about what is actually being presented, for example, the PCA chart seems to show individuals scattered all over the place, without any clustering. It would be good to have this study replicated with well-sized cohorts and clear reporting. Figs 2e, 2f, Extended Fig 4a-b.
The authors say that IgM against fibronectin (IgM-IFN) might be a natural IgM with scavenging and protection functions, and that reduced levels of this IgM could cause autoimmunity. They note that a correlation between higher circulating fibronectin and decreased IgM responses against fibronectin has been documented in trypanosoma infection (which is not the first time that trypanosoma has been mentioned in the same sentence as ME/CFS).
They did another small study (7 severe ME/CFS, 5 Long Covid, 5 healthy controls) reported later in the paper finding IgM-FN1 in healthy controls but not in the patient groups. (Extended fig 5e). It's not very convincing due to the size of study and possible selection biases, and an inadequate presentation of the results They then did a bigger study (63 HC; 66 Me/CFS; 55 no LC; 63 mild LC; 22 severe LC). In this one, they didn't find any difference in IgM-FN1 between healthy controls and ME/CFS. And all of the post-Covid-19 groups, including those with no LC had lower levels of IgM-FN1 and IgG-FN1. Fig 3a-d. I'm afraid it isn't looking very convincing as a cause of ME/CFS and/or LC.
D. Circulating fibronectin
The authors suggest that a lack of fibronectin within immune complexes (i.e. bound to the IgG, IgM, IgA) and the resulting accumulation in the blood 'can indicate lack of protection against certain pathogenic infections'. So, they looked at levels of circulating fibronectin in serum.
ME/CFS 66 patients; 63 healthy controls
They report finding significantly higher levels in ME/CFS (Fig 2g-h), and that levels were positively correlated with severity (Fig I-j).
Below, the chart - red controls, blue severe ME/CFS, yellow mild/moderate ME/CFS. Levels do seem to be a bit higher in severe ME/CFS, but there is a lot of overlap.
View attachment 19802
They then looked at the Long Covid patients (Fig 2k) - red healthy controls, blue healthy post-Covid-19, yellow mild LC, pale blue severe LC. This is even less convincing. I don't think it can be said that all three of the post-Covid-19 groups, including the healthy people, have different fibronectin levels. I'm not sure how many people were involved in this study, it's not in the results, but might be in the Methods.
View attachment 19803
I haven't got to the discussion yet. Maybe there is something in here, but it is buried in small studies that are often reported without clarity. There's clearly been a lot of work done and some creative thinking, and I really appreciate that. I think for future papers, it would be better if the authors concentrated on reporting the results of just one well-powered study, or a few related investigations.