To return to the comparison with asthma, in addition to problems matching severity of impairments between contrasting conditions mentioned, my perception, which may be totally inaccurate, is that doctors have a reasonable understanding of this condition and a well evaluated repertoire of pharmacological management tools, that there are effective tools for managing the symptoms of this condition and effective strategies to deal with severe attacks.
In contrast ME/CFS is not understood by most doctors, there are no demonstrably effective treatments or management strategies for the condition over all and no treatments at all for crashes/PEM. Further the preferred management strategies of GET and CBT are at best ineffective and at worst harmful.
So I wonder which group would you expect to have more 'negative thoughts'.
I remember vaguely a very old study on depression that set out to prove that depression was the result of irrational pessimism, but came to the conclusion in contrast that the non-depressed comparators were irrationally optimistic. How can any study address the impact of 'negative thoughts' unless there is a meaningful way of evaluating how rational those thoughts are? As people say above, this study conflates the researchers beliefs/prejudices about ME/CFS with an objective evaluation of the 'negative' nature of the subjects' thoughts. If these thoughts are accurate can they meaningfully be described as negative?