tralfamadorian97
Established Member (Voting Rights)
@tralfamadorian97 just looking back on this, how do you decide which files to use?
Here is a list of LD matrix files available from the Broad Institute. These files are named according to the scheme <chromosome>_<start_position_hg19>_<end_position_hg19>. To fine-map each of DecodeME's hits, I downloaded the LD matrix file whose chrom/start_hg19/end_hg19 genomic coordinates contained the location of the hit.